SNP Profiles of NA 286 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	TT	AA	TT	CC	CC	AA	AA	CC	GG	TT
1._GC-01-101-5-18	CC	AA	GG	TT	TT	AA	TT	CC	CC	AA	AA	CC	GG	TT
2._GC-01-101-5-18	CC	AA	GG	TT	TT	AA	TT	CC	CC	AA	AA	CC	GG	TT
3._NA_286	CC	AA	GG	TT	TT	AA	TT	CC	CC	AA	AA	CC	GG	TT
4._NA_286	CC	AA	GG	TT	TT	AC	TT	CC	CC	AA	AA	CC	GG	TT
5._GC-01-101-5-18	GG	AA	CC	AA	AA	AC	AA	_	_	AA	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	CC	CC	AA
1._GC-01-101-5-18	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	CC	CC	AA
2._GC-01-101-5-18	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	CC	CC	AA
3._NA_286	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	CC	CC	AA
4._NA_286	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GG	CC	CC	AA
5._GC-01-101-5-18	AA	GG	GG	GG	CC	CC	_	GG	AA	GG	CC	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
1._GC-01-101-5-18	GG	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
2._GC-01-101-5-18	GG	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
3._NA_286	GG	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
4._NA_286	GG	AA	CC	AA	CC	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
5._GC-01-101-5-18	GG	AA	GG	AA	GG	AA	GG	CC	CC	TT	GG	X_X	X_X	X_X

Input profile: NA_286

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Mars Center for Cocoa Science, Brazil

Location: 1518 11 > F

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

1._NA_286 GC-01-101-5-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

Mars, 2018

2._NA_286 GC-01-101-5-18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Mars, 2018

3._NA_286

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1518 4 > FP

Dapeng Zhang, 2016

4._NA_286

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F511 T4

Dapeng Zhang, 2016

5._NA_286 GC-01-101-5-18

48.5 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 18, Tree: 11 > FP2

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25

SNP Profiles of NA 286 View Data

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Input profile: NA_286

1._NA_286 GC-01-101-5-18

identical 39 shared markers

2._NA_286 GC-01-101-5-18

identical 39 shared markers

3._NA_286

identical 39 shared markers

4._NA_286

98.7 % 39 shared markers

5._NA_286 GC-01-101-5-18

48.5 % 34 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

98.7 %
39 shared markers

48.5 %
34 shared markers